The new supercomputer an Altix UV 1000 model supplied by SGI enables DTU researchers to rapidly identify new genes and proteins that can be used in future sustainable biotechnology industrial processes and named Anakyklosis, Greek for recycling, reflecting its importance to a biologically sustainable future.
 


"Systems Biology involves research that combines and integrates extremely large data sets, including genetic information. The new supercomputer has a huge so-called 'shared memory', which enables us to handle these data more quickly and flexibly.

"The computer's capacity will considerably expand our ability to answer the basic biological questions we face, such as how to get a cell to produce something it was not originally made for," explains Søren Brunak,  Center for Biological Sequence Analysis director at DTU Systems Biology, where Anakyklosis is already has been linked up to other supercomputers.


"The need for larger and faster computers has become very urgent due to the development of metagenomics research. This deals with mapping the entire genome content of bacterial communities, such as those found in the deep oceans, in wastewater or in our own gut. The resulting amount of data is several thousand times larger than the entire human genome," says senior researcher Nikolaj Blom from the new Novo Nordisk Foundation Center for Biosustainability at DTU, which has funded the computer.

Metagenomics systems biology will be one of the center's six main research areas, and the supercomputer will be part of the center's search for new enzymes for the biotech industry and the construction of biological cell factories.

The goal of the center's research is to produce future chemicals in living cells from inexpensive and sustainable raw materials and reduce world dependence on oil.
 


"It's mainly the memory of our computers, which currently limits how much data we can process at a time, and thus how quickly we make progress with our analysis," says Thomas Sicheritz-Pontén, who directs research in metagenomics at the Novo Nordisk Foundation Center for Biosustainability.

"Anakyklosis can hold the equivalent of 2500 human genomes in its working memory at once, so it opens up new opportunities for systems biology research."